PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G125000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 742aa    MW: 83431.6 Da    PI: 6.4426
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G125000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-2344145199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Manes.01G125000.2.p  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 131
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Manes.01G125000.2.p 132 --WNEKNQLLLGIRRA 145
                          ..8899999****997 PP

2Auxin_resp120.11.7e-39170253183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Manes.01G125000.2.p 170 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 253
                          79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-4928173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-4237159IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-2143144No hitNo description
PfamPF023621.1E-2144145IPR003340B3 DNA binding domain
SMARTSM010191.1E-2344146IPR003340B3 DNA binding domain
PROSITE profilePS5086312.33744146IPR003340B3 DNA binding domain
PfamPF065071.5E-34170253IPR010525Auxin response factor
SuperFamilySSF542773.29E-7630710No hitNo description
PfamPF023091.8E-7633720IPR033389AUX/IAA domain
PROSITE profilePS5174524.637636720IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLT PQEQKDTFLP MELGMPSKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFSQQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNEKNQLLL GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF  180
TVFYNPRASP SEFVIPLSKY VKAVFHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL RRPWHPGPSS  300
LHDNRDEAGN GLMWLRGGTG EQGLHSLNFQ AVNMFPWAQQ RLDPALLGND QSQWYQAMLA  360
TGLQNVGSGD PLRQQFMQFQ QPFQYLQQSS SHCPLLQLQQ QHQAIQQSTS HNVLQAQNQI  420
STESLPQHLL QQQHNNQPDD HAQQQQQHHN YHDALQIQGE LQRQQSNVPS PSFSKTDFMN  480
SNTKYTASTT PIQNMLGSLC AEGSGNLLDF TRNGQSTLSE QLPQQSWVQK YAHLQVNAFT  540
NSLSLPRPYP EKVPAMEPEN CNLDAQNATN FGMNIDSSGL LLPTTLPRYT SSTVDADVSS  600
MPLGDSGFQN SIYGGMQDSS EILPSTGQVD PPTPSRTFVK VYKSGSVGRS LDISRFSSYH  660
QLREELAQMF GIEGKLENPH RSGWQLVFVD RENDVLLLGD DPWEAFVNNV WYIKILSPED  720
VQKMGEQGLE SLGPNVGQRI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1241274115388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074114.10.0PREDICTED: auxin response factor 8 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A067KWZ20.0A0A067KWZ2_JATCU; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8